| Fr., 16.04.2004 | FC St. Pauli - FC Schalke 04 II | 2:0 |
| Sa., 17.04.2004 | Wuppertaler SV - Chemnitzer FC | 1:2 |
| Sa., 17.04.2004 | SG Wattenscheid 09 - Borussia Dortmund II | 3:0 |
| Sa., 17.04.2004 | Eintracht Braunschweig - FC Sachsen Leipzig | 1:0 |
| Sa., 17.04.2004 | KFC Uerdingen - 1. FC Köln II | 2:1 |
| Sa., 17.04.2004 | VfR Neumünster - SV Werder Bremen II | 1:4 |
| Sa., 17.04.2004 | SC Preußen Münster - Holstein Kiel | 2:1 |
| Sa., 17.04.2004 | Hamburger SV II - Rot-Weiß Essen | 0:4 |
| Sa., 17.04.2004 | 1. FC Dynamo Dresden - SC Paderborn | 2:1 |
| Sp. | S-U-N | Tore | Diff. | P | ||||
|---|---|---|---|---|---|---|---|---|
| 1. |  |  | Rot-Weiß Essen | 27 | 16-5-6 | 54:22 | 32 | 53 |
| 2. | |  | SV Werder Bremen II | 27 | 15-7-5 | 50:31 | 19 | 52 |
| 3. |  |  | Wuppertaler SV | 27 | 15-6-6 | 40:29 | 11 | 51 |
| 4. | |  | 1. FC Dynamo Dresden | 27 | 13-11-3 | 36:21 | 15 | 50 |
| 5. | |  | SC Paderborn | 27 | 14-8-5 | 41:31 | 10 | 50 |
| 6. |  |  | Borussia Dortmund II | 27 | 11-6-10 | 37:34 | 3 | 39 |
| 7. | |  | Chemnitzer FC | 27 | 12-3-12 | 28:31 | -3 | 39 |
| 8. | |  | Eintracht Braunschweig | 27 | 11-5-11 | 33:32 | 1 | 38 |
| 9. | |  | KFC Uerdingen | 27 | 10-6-11 | 38:37 | 1 | 36 |
| 10. | |  | FC St. Pauli | 27 | 9-6-12 | 36:31 | 5 | 33 |
| 11. | |  | Holstein Kiel | 27 | 8-8-11 | 40:46 | -6 | 32 |
| 12. | |  | SG Wattenscheid 09 | 27 | 8-7-12 | 37:47 | -10 | 31 |
| 13. | |  | FC Schalke 04 II | 27 | 8-7-12 | 39:50 | -11 | 31 |
| 14. | |  | 1. FC Köln II | 27 | 7-9-11 | 39:44 | -5 | 30 |
| 15. | |  | Hamburger SV II | 27 | 7-8-12 | 23:42 | -19 | 29 |
| 16. | |  | SC Preußen Münster | 27 | 6-10-11 | 30:38 | -8 | 28 |
| 17. | |  | FC Sachsen Leipzig | 27 | 4-11-12 | 29:38 | -9 | 23 |
| 18. | |  | VfR Neumünster | 27 | 3-9-15 | 28:54 | -26 | 18 |