| Fr., 30.04.2004 | Eintracht Braunschweig - SV Werder Bremen II | 2:1 |
| Sa., 01.05.2004 | Holstein Kiel - Chemnitzer FC | 3:0 |
| Sa., 01.05.2004 | Wuppertaler SV - FC Schalke 04 II | 1:1 |
| Sa., 01.05.2004 | SG Wattenscheid 09 - 1. FC Köln II | 2:4 |
| Sa., 01.05.2004 | KFC Uerdingen - VfR Neumünster | 3:0 |
| Sa., 01.05.2004 | SC Preußen Münster - Rot-Weiß Essen | 1:3 |
| Sa., 01.05.2004 | Hamburger SV II - SC Paderborn | 1:1 |
| So., 02.05.2004 | 1. FC Dynamo Dresden - Borussia Dortmund II | 3:1 |
| So., 02.05.2004 | FC St. Pauli - FC Sachsen Leipzig | 1:1 |
| Sp. | S-U-N | Tore | Diff. | P | ||||
|---|---|---|---|---|---|---|---|---|
| 1. |  |  | Rot-Weiß Essen | 29 | 18-5-6 | 58:23 | 35 | 59 |
| 2. |  |  | 1. FC Dynamo Dresden | 29 | 14-11-4 | 40:24 | 16 | 53 |
| 3. | |  | Wuppertaler SV | 29 | 15-8-6 | 41:30 | 11 | 53 |
| 4. |  |  | SV Werder Bremen II | 29 | 15-7-7 | 51:34 | 17 | 52 |
| 5. | |  | SC Paderborn | 29 | 14-10-5 | 42:32 | 10 | 52 |
| 6. | |  | KFC Uerdingen | 29 | 12-6-11 | 42:37 | 5 | 42 |
| 7. | |  | Eintracht Braunschweig | 29 | 12-6-11 | 36:34 | 2 | 42 |
| 8. | |  | Chemnitzer FC | 29 | 12-4-13 | 28:34 | -6 | 40 |
| 9. | |  | Borussia Dortmund II | 29 | 11-6-12 | 38:39 | -1 | 39 |
| 10. | |  | FC St. Pauli | 29 | 10-7-12 | 39:32 | 7 | 37 |
| 11. | |  | Holstein Kiel | 29 | 9-8-12 | 43:47 | -4 | 35 |
| 12. | |  | FC Schalke 04 II | 29 | 9-8-12 | 42:52 | -10 | 35 |
| 13. | |  | 1. FC Köln II | 29 | 8-10-11 | 44:47 | -3 | 34 |
| 14. | |  | SG Wattenscheid 09 | 29 | 9-7-13 | 43:53 | -10 | 34 |
| 15. | |  | Hamburger SV II | 29 | 7-10-12 | 24:43 | -19 | 31 |
| 16. | |  | SC Preußen Münster | 29 | 6-11-12 | 31:41 | -10 | 29 |
| 17. | |  | FC Sachsen Leipzig | 29 | 4-12-13 | 32:43 | -11 | 24 |
| 18. | |  | VfR Neumünster | 29 | 3-10-16 | 28:57 | -29 | 19 |